`_
.. hint::
Consult section on :ref:`handling_h52nx_issues` in case of troubles.
Python API
----------
You can also convert to NXtomo directly from the Python API using the :class:`TomoHDF5Config` class and :func:`from_h5_to_nx` function like:
.. code-block:: python
from nxtomomill.converter import from_h5_to_nx
from nxtomomill.models.h52nx import H52nxModel
config = H52nxModel(
input_file=...,
output_file=...,
)
from_h5_to_nx(
configuration=config,
)
h52nx_conversion_exercise.ipynb 0000664 0000000 0000000 00000026536 15174674030 0032550 0 ustar 00root root 0000000 0000000 nxtomomill-2.1.0dev3-475dd3907f78ea831727cd242104c9c2d16182f8/doc/tutorials {
"cells": [
{
"cell_type": "markdown",
"id": "ea64e983",
"metadata": {
"slideshow": {
"slide_type": "slide"
}
},
"source": [
"# h52nx: exercise\n",
"The goal of this exercise is to convert BLISS raw data to NXtomo format.\n",
"\n",
"\n",
"\n",
"There is 3 different ways to convert a `raw` file:\n",
"\n",
"* from the Command Line Interface (CLI)\n",
"* from the python API"
]
},
{
"cell_type": "markdown",
"id": "e68116af",
"metadata": {
"slideshow": {
"slide_type": "subslide"
}
},
"source": [
"## from the command line interface\n",
"\n",
"``` bash\n",
"nxtomomill h52nx [...]\n",
"```\n",
"\n",
"### access help"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "b115b3f8",
"metadata": {
"scrolled": true,
"slideshow": {
"slide_type": "fragment"
}
},
"outputs": [],
"source": [
"%%bash\n",
"nxtomomill h52nx --help"
]
},
{
"cell_type": "markdown",
"id": "a083dfd2",
"metadata": {
"slideshow": {
"slide_type": "fragment"
}
},
"source": [
"**Note: all tomotools software have `--help` option**"
]
},
{
"cell_type": "markdown",
"id": "e65260c2-b5d0-40cf-9ce2-33d72d661376",
"metadata": {},
"source": [
"From the CLI you can provide options directly from the CLI or using a configuration file.\n",
"\n",
"The second one offers more options and some fine tuning. Nevertheless more metadata are available from the bliss file and this is now rare to need configuration files.\n",
"So on this training we will only focus on the first method.\n",
"\n",
"In case you need to do advance 'conversion' please refer to the [documentation: h52nx - with a configuration file](https://nxtomomill.readthedocs.io/en/latest/tutorials/h52nx.html#with-a-configuration-file)"
]
},
{
"cell_type": "markdown",
"id": "84a79930",
"metadata": {
"slideshow": {
"slide_type": "subslide"
}
},
"source": [
"### usage example\n",
"\n",
"If we have a bliss file: 'bliss_file.h5' that we want to convert to a *NXtomo* entry.\n",
"\n",
"``` bash\n",
"nxtomomill h52nx bliss_file.h5 output_file.nx\n",
"```\n",
"\n",
"Once converted you can have a look at the output file and insure the conversion want smoothly: \n",
"\n",
"``` bash\n",
"silx view output_file.nx\n",
"```"
]
},
{
"cell_type": "markdown",
"id": "59db46dc-93c3-47eb-aca7-af4ec4b7e979",
"metadata": {},
"source": [
"\n",
" Note: For each bliss sequence it will generate one NXtomo (at the exception of `pcotomo`).\n",
"
"
]
},
{
"cell_type": "markdown",
"id": "0af7ddd5-9883-4dca-baf1-a298b5841875",
"metadata": {},
"source": [
"\n",
" Tip: All available entries will be converted. If you want to limit it to some entries you can use the `--entries` and `--ignore-sub-entries` options.\n",
"
"
]
},
{
"cell_type": "markdown",
"id": "905868a8",
"metadata": {
"slideshow": {
"slide_type": "fragment"
}
},
"source": [
"\n",
" Note: Output file extension can be '.nx', '.nxs', '.h5', '.hdf5' or '.nexus'. We encourage to use '.nx' as a standard for 'readability' and 'simplicity'.\n",
"
"
]
},
{
"cell_type": "markdown",
"id": "80312a0f-e16f-49e0-9e80-43010915a376",
"metadata": {},
"source": [
"\n",
" Note: If the output is not provided and the bliss file has `RAW_DATA` as a parent folder then the default behavior is to create the NXtomo to the `PROCESSED_DATA` directory.\n",
" If an output directory is provided then it will be take into account.\n",
"
"
]
},
{
"cell_type": "markdown",
"id": "e0977673",
"metadata": {},
"source": [
"## Warning about relative links\n",
"\n",
"Both the NXtomo file and the bliss master file contains relative links to the Tango files. This setup allows us to avoid copying all the frames, which constitute 99% of the dataset.\n",
"\n",
"### Important considerations:\n",
"\n",
"* **Moving Files**: Be cautious when moving a Bliss file or an NXtomo file. If you move them without the associated Tango folders (scanXXXX), you will break the links. Consequently, all frame values will default to 0, causing any reconstruction or Center of Rotation (CoR) search to fail. These errors often occur silently.\n",
"\n",
"* **Checking Relative Paths**: You can verify the relative path of the first link using Silx View. Navigate to the HDF5 tab, then to External Sources, and check the first entry.\n",
"\n",
"\n",
"\n",
"* **Display of a dataset with broken link**\n",
"\n",
"\n",
"\n",
"* **HDF5 link resolutions rule**:\n",
"\n",
"* first relative to the current working directory.\n",
"* second relative to the file path.\n",
"\n",
"*note*: when encountering such issues, the simplest solution is to 'recreate' the .nx file."
]
},
{
"cell_type": "markdown",
"id": "eec6fd54",
"metadata": {
"slideshow": {
"slide_type": "subslide"
}
},
"source": [
"## hand on - exercise A\n",
"\n",
"convert `bambou_hercules_0001.h5` to `bambou_hercules_0001.nx`"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "60ac74c6",
"metadata": {
"slideshow": {
"slide_type": "notes"
}
},
"outputs": [],
"source": [
"%%bash\n",
"# TODO 1: convert bambou_hercules_0001.h5 to bambou_hercules_0001.nx\n",
"# TODO 2: browse the file using silx view"
]
},
{
"cell_type": "markdown",
"id": "c0b3d275",
"metadata": {},
"source": [
"### configuration file overview.\n",
"\n",
"The configuration file look like: \n",
"\n",
""
]
},
{
"cell_type": "markdown",
"id": "8bcd9a3c",
"metadata": {
"slideshow": {
"slide_type": "subslide"
}
},
"source": [
"The configuration file is split into several sections:\n",
"\n",
"##### `GENERAL_SECTION` section\n",
"\n",
"Mandatory section. \n",
"\n",
"Define information regarding I/O and extra information to the acquisition (format, FOV...)\n",
"\n",
"##### `KEYS_SECTION` section\n",
"\n",
"Optional section if FRAME_TYPE_SECTION is provided\n",
"\n",
"Define dataset location of the different information to get.\n",
"\n",
"##### `FRAME_TYPE_SECTION` section\n",
"\n",
"We will present this section at the end of the notebook. For now it can be ignored / removed\n",
"\n",
"##### `EXTRA_PARAMS_SECTION` section\n",
"\n",
"From it you can provide some values for energy or pixel size for example ignoring the existing value (if any)\n",
"\n",
"\n",
"We will see on the next slides the possible usage of each section.\n",
"\n",
"But for this simple use case we can only provide input_file and output_file in the GENERAL_SECTION and execute it."
]
},
{
"cell_type": "markdown",
"id": "67f12627",
"metadata": {
"slideshow": {
"slide_type": "subslide"
}
},
"source": [
""
]
},
{
"cell_type": "markdown",
"id": "9edffb88",
"metadata": {
"slideshow": {
"slide_type": "fragment"
}
},
"source": [
"And to execute it we can go for:\n",
"```\n",
"nxtomomill h52nx --config my_configuration_file.cfg\n",
"```\n",
"\n",
"\n",
" warning: If you provide a relative path be meticulous regarding your working directory.\n",
"
\n"
]
},
{
"cell_type": "markdown",
"id": "fdec6727",
"metadata": {
"slideshow": {
"slide_type": "subslide"
}
},
"source": [
"### hand on - exercise B\n",
"\n",
"create a default configuration file and convert `bamboo_hercules_0001.h5` to NXtomo"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "1779e4f6",
"metadata": {
"slideshow": {
"slide_type": "fragment"
}
},
"outputs": [],
"source": [
"%%bash\n",
"# TODO 1: create a nxtomomill configuration file\n",
"# TODO 2: convert `bamboo_hercules_0001.h5` to NXtomo"
]
},
{
"cell_type": "markdown",
"id": "5e7f9f14",
"metadata": {
"slideshow": {
"slide_type": "subslide"
}
},
"source": [
"## conversion from the python API\n",
"\n",
"the `h52nx` command call `nxtomomill.converter.from_h5_to_nx` function.\n",
"\n",
"To do the same operation from a python script you could have execute\n",
"\n",
"``` python\n",
"from nxtomomill.converter import from_h5_to_nx\n",
"from nxtomomill.models.h52nx import H52nxModel\n",
"\n",
"input_file_path = \"bambou_hercules_0001.h5\"\n",
"\n",
"configuration = H52nxModel(\n",
" input_file=input_file_path,\n",
" output_file=\"output_file.nx\",\n",
")\n",
"\n",
"\n",
"# ...\n",
"\n",
"res = from_h5_to_nx(configuration=configuration)\n",
"```\n",
"\n",
"The `H52nxModel` is containing the same information as the configuration file."
]
},
{
"cell_type": "markdown",
"id": "1b458593",
"metadata": {},
"source": [
"\n",
" Note: `nxtomomill.io.config.hdf5config.TomoHDF5Config` has been deprecated and replaced by `nxtomomill.models.h52nx.H52nxModel` since `1.2` version\n",
"
\n"
]
},
{
"cell_type": "markdown",
"id": "c30bdb42",
"metadata": {
"slideshow": {
"slide_type": "subslide"
}
},
"source": [
"### hand on - exercise C\n",
"\n",
"convert `bamboo_hercules_0001.h5` to NXtomo from a python script"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "5ba0fd10",
"metadata": {
"slideshow": {
"slide_type": "fragment"
}
},
"outputs": [],
"source": [
"%%bash\n",
"# TODO: convert bambou_hercules_0001_exotic_rotation_location.h5 into a valid NXtomo containing expected rotation angle"
]
},
{
"cell_type": "markdown",
"id": "1a5f9a61-3193-4359-b796-6e78f2fa8900",
"metadata": {},
"source": [
"## Going further\n",
"\n",
"In case of troubles you can have a look at [handling_h52nx_issues](https://nxtomomill.readthedocs.io/en/latest/userguide/handling_h52nx_issues.html)"
]
},
{
"cell_type": "code",
"execution_count": null,
"id": "32baf306-6140-44be-b1f9-9d4eaf0ebbb4",
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"celltoolbar": "Slideshow",
"kernelspec": {
"display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.12.3"
}
},
"nbformat": 4,
"nbformat_minor": 5
}
nxtomomill-2.1.0dev3-475dd3907f78ea831727cd242104c9c2d16182f8/doc/tutorials/img/ 0000775 0000000 0000000 00000000000 15174674030 0025224 5 ustar 00root root 0000000 0000000 nxtomomill-2.1.0dev3-475dd3907f78ea831727cd242104c9c2d16182f8/doc/tutorials/img/data_flow.png 0000664 0000000 0000000 00000041425 15174674030 0027700 0 ustar 00root root 0000000 0000000 PNG
IHDR c zh sBIT|d pHYs
B(x tEXtSoftware www.inkscape.org< IDATxwxTe?Izo
*JSTTbuյG\յ
wBMs)Li'3wny3{y{`0dtGp`5}z f} e@jǍQ_ ] !pz !a,V,k F`끅@/@K`y xY: <
f8˲j`0 P e~ J5V"g~}D@[gYC`j!:˦j`H QS=.az !xOt @+uܳa 8|o ,
\ xk8n!(Xۻ]0>=Qc0Lk0=&݁xہYH
#p ĸˑypX+
p4AY*p1! ~
@)"hc{@2Çİ s[@gsChPo'0`pc0d*&5d !z i+=,HIi$cIF
4p) 8-CDkv`036Rӳ
mR=!0!sp1rS=4`+b Y "
ıht8˶ #Eqo "l$p2
X$l0vn=aP>_L>`xLk D'wE\3aFd ;T5SHV[$3IE}:AMLpp$7L.Jv0T`LkD" ?[Wxm0R@,!Ru>!Ybp Y
D`H
+s =CR= 6c_Ciͅz |z8i¿DcԼZU
ﾇy}^go"73p !6R>֮]gGHh ڈ ~
'kO'6]eu8%ܞ<|hpE
}LOq("(F
`H9nҝZ5aUwx U H!q 붏捈 xA݈n2"# d>DXt @
.F2Թ7l ijzx<S=`_C]x+t~DGLgqm smF,ϲۡ%Bĥtz, x"Vh C]J }3q@T`HwLkhڡQbKrpgٓH`<M&;cjXEWzD |*` ~
uF+z Cu>T(@ E)pSHY2y 8
dݐLqؙ 鏿UׄVCELk0@6CQ\qXD Ok?`"b=vuc# @.e R{;4JVq r 9W ~q~֩ L0|}nB$J^xD
)ے9 vcZ%lj>J ې`)R{;0(㭌) K1 ^3J I03mG6g {1cI:&5¡(oE4JMn2 )rۇC@bPX 1G1Tx/NJ
1*y"{A!BBfr
៝8˞> N *y쉃,Jxha!㑛_BkL@
)C,[%_ e V 킏w D g'O"Oqȴ\ : dP#g) Vqg0qS^dS ~
醇t>2Ur ~g3/t]"gWah# pOiume0VYo0T`J2 x!%_S!>h(Paz SM|> G#b"Vh^MN\ lGxF '!H/eg?z40&u*~oG%f!үpG 9o
LfV I8$|4v98 Mcθ#<;&J/ vI Lk0T _#t>*5 P Rl
);
ѯ y*F|{!fu|$ LGJDq 2ux3xf0e|?w+Wz@v.aD~;"? j$q֛CDXύCa9H$4= Q/FfAdjۣT`)VGhԐH<
Dw>pƃqHc
𐳬s""8`9H\$F{#46`Z%'s CT$DƅttN䠪 ~
) h| b
IP6!\m 3GA /Etɾp"m0 EVq or\%@]!7]}k9Hp0 1,}e\ːs@=r8 nW$qr %Z%"'<OgY1")mp?4
\w ':@_g0G;zôJݦ-p)R1XK uٲ&,! w;`y#w"y\>@f
7 Zߐzg@fN& _ gyCLu XQ3jUKILgHYuQ}Z[1ȉ}--z$ VHg_L cZ%lj!#3bޱ$;WDF4_BFTE,~ϟ;dM-`<!5hj}?co}85:߿ ZHed*p ͨ/·ȅA!ߋiw3 q1kNafqkD(' Ej.`-(0Nof1xS=: DKH5^$3[A6=܂48 ȟuw.p4T
Ֆ<64PI2J`WZ% 2aޑߏ3=!c-hed"HF"p4E,Wf( ~ )T֣Js]_&{D&[.jw"EձskhrbgCHTmci1LX=tS:)ܻ㭝(/1j
IEAwz]0h<7
T0uh0 D)t˅B+ áC*6 h ~eV8hT֓ށ M 4qu'[S=(E:zבL/H#H[L$8RD IiqK\} *Ogׄz=8mT( y R|%h+ HT K4OP7tH ߨ)ߵg+HwCSa ?ň9ē,$p&3go ;icn0d0Vgwwz1W ITy6OcvbCH-=g-^58.` N@sGM)B|yv><xt"8 y=0 NԖcZ%G'.0(v!0̞Ef
x^ a b |Bϑٸ Tqt@fӆʂ =2-^/]h\d mc3]WU"Ѝ}Jlv#Cugolc5 r>V=#uk]r8l$(;h͑d)3*UrE\=}|fHQ
r ܆P1p,_W)6|*jS#6CO#xJ)^tI_h`9j}?D 2DG8@a=[%/@gg5 j62T)9t!t3 C GA.4AΘ KWr:HӊPN
xx"}׃bKtJXM($g* ӐlJ y <eӐ$9T e=Hd5*.9,@n?jݼ Urga nܐH G`d^{/swkd[r؟lu%譥XǺyK*;L*{zV7˽m)H L#j-0#1H`*): 9WM1R) :_iiZ E!'ހxI܈hW$fA x<"VH/İЈ~{Q)PCN7 b9Z8*Qhێ.mSPnc{*^ꩆ*75 uQ~||ElF ÞԐfW[_[ \uҧuwRH.{| tvV b l.E 7ja׃P*=ezNVr+h$9 pϕ`]UYZu30q{S&}F/XH#ITlw+]g;{ m bXPÄ 3
Q$
g%@iG =DQ \d]d`Mۀ[=W )eC":}v'.B;5;Ur*x fDTI:SL^c~m zUb\sa Ay+ ENi\ن+۪om~g=hPG7u
T`V[%_ >5!n!CWDf} O!5Qo!ɿrĿ $~w-tgaz]O!3w ~ GjV #`ڗ`
^b ḌIN8r2:N"#H ؆4f_谺4Fo`'
%*9٬&ziD0o7zNTU3
+ ??h>к ]&hKe2R^kYv#V6"҇' ۑHl$T| C ~?CsĢTĽ+ߩĮgѽgX)y6ۄTFuzIMT7oe mRlѸe. ks`+Qf;kn;+fChvXk^vxE;'s2r(?k]Eپxl?У`9=v0X"klC{J[FN^}҃%7 >ܰzNpIRAS &剧vJ6.3
__Ȧ'c+ín%߈u?'lAK7u RE
0QF4*y"- ~Ic7z(kRn:+͍~.6!H ]@*+*lB-3k<|q^AӐ/
k3
G'ͺXO;1
',귈kR8ϱga˧Y!u38k .;x
рr)mn>n*#62nC YO|~oʙWpYץ;hp\z'O^?Шe4}>
2 >4p~4J6d% ,D/߇v;jh +o9.ћK_ukT
=wvZQ] oq]dlzv+A
ݨ
NoՐpl@/߇58u| 9ĭRPa] ř.=e;zs d[M.j XoM;ћKAkTz#b&wI[ʰ] Xb] E>Pz/a, 5(/[o.~eM~c-40B5pal{̤[ňv7Hd{H|R`6! uAZ,91ö@pWmθt+v5/%%ߪd o" <@2? n02"H<`Y[R*dm$Nj٭AFЎMѝD|.q[ slj֞ٹ7E *, ?悾my<uTOV'I
.Z_銓3j~_2 i&ً>rmાf {h5 Չ{KɞVw6^1~t nSf;i|t/r/ 8e |[*TuϣA|,Fiу=K0
=c]YHR/YM6a i_7!r Tl~V5 ];R@/F+OyH&&KLFG=i:Yt׆ X뉃؋jSK?vV߯Ixc]r}l.Eo.;u;y@AىnU{2w=mp= .Ћ5oygS}xY nJa=#t %'P|3BO y`n.RP߅R`#w;.l_az;@g&YJ/9eFnh`7QEZúMBH\H(%$hoU,B+cMהi^2T 7 ,~ 4 5"ʞص
$`gCV-j+蝹nm ś dx~זRvcb[#:}oy0s>CΛ!,j)ܔwt ~Mnme;f6'} ^E~qfJᎯ9le! B?3^yYsd6=" 5xv4pJ^70' 9&u OtA 6 VV\Z%+}stFW!7Fcp^?#YHvӹAuJ+^غީK'n:nuxo d [d ZhR}Xh:MJAٕZ
XZC }m
zvCzX('ob/5]6zz^'V7bZe7⺣;j\R/c9}c-[Bz/ |[u}WRاݍJKpР : A IDATځE_U.س
Y%nQa9-c ucWT\тډ镒
Au/2U2뺻 o*ܯak7G(D,ԁ
NnWUM_,{ilߪsManlҟDY;D뀿
3j?D
ڗ; ݉_# ۳+L @&)ݬu--$@fe`fy}&)
߯{ >ߺ\REۗI=o>OucNk/ ;｠F-* _&r
2+p3" ?E1c~KdjDV x9xqZ#Yw)Um_~k=Uo@ `W/K55
\u ,^Q$e ƴU6ۺʟZ ± ݱNk-SOc+I/׃k.A{}jp $
> l PA#/KR}z4pnU
M/P-ؽIֹ뤖Xg1
s%S$K\-ޞ7Lȭ;
tohZh$^f8
3 [%sЧzP ӣR7d<aU:ܮd
I߄hNZ!/? 87m@4"u_X[&]cXبoW9t*} bɲeovՃ;Hk@p;c M*ʦؽqmL(/;cDb;ٞב`y 2 Wʱo9l/}SԱ6ۥ~,kfKi~nYnB2ٯ9ۭuL$=HLڷ@hD
VM1Dwߞ]7+$=Gpoߐ́
3ҁs?m3 nHoU Z
oj]1cF,ך _Qͳ*i*vMVBKC*7 .2g-QsD蹌 ÙmP+KWfK ;L<']W|b`O*Ka $[I1jkQ
ũwݳ09TŞX&~Mw$[}wރ#gPKَ8%|TTr ᘈl ^#J* YHfgu"UcJsJ=;
.=?mͶ{hvE!1Ч5+\'X}apXXՄgއo\V2sdwyqoMYa==-Yٽ[P[h&8%}-ٙIݙ=;Ko)h9 +nf
҄M uK Ƀt){s2 uڲ#ϸp)ԟs7TlEџOfW=T("#sϧz jhsp#zC ~fY(xo ޱЫ%p5}?ug XcaAd ?BF]Һh>=fMFb +k?JF,Do(Rv2Ja[(ϋ^Y纤C\!gs
#gϨ` gY4w G.HbW(쉰p2 y:!z\ުtU6F<|"n)6(xq:DZpDO?}VBPxa q By%pzi>0X]/. Am.ܶa{QúU;ԄE7?crYB{ʁ,?+WRw0}pb W h>]M-{i. oԉ `Y*ڴ9c1 /ߩ|ʸ{HBd§uP28Eui
;nźzFl
\? 65@6sk_ठjϭNl)-:: ' u=k5X:=Lc]gaA>%K87˒:@i,>ͻ=b[nѲ4Y!3o
)tEIt>]P\qlTk֡tB MXBY ԃ鄻`BPYf;-4D{6% W. #_q<JQK`e1z%ZhAoWl+rvqWYa;ϣ+b
Z$BP6vīwi,A#iliؑm| a^4/}{dzwwܖd{F+C}7gLO "
W C6@ W*_G]+5lE!ND>[Uj@ۜ36Qw:Xd+ɆW:ܨAy?h߇qn%_bͲʾd촓2 醢Zٙ-kKTe _{!bw+e|ňDw1nwD$h0o51j )3[(܄on!vW7n`/C}0
ƕ,cޯN PmLk0"1$ ?m0hͫ^.6+|k j_`װ`_!lG3QW!4G Dz
'P[P-tf;wo6bX##&52E 6 5Zga=Nf|
`:9wXJ#5_A2;rfH L䲕b>L02a|nMXV:iE S+xso&8 V v].P}
2^0LHe7X!NdjSR=dnKh_F
y t/B=o ws\ `$~&Lk0T 6l
},KPj1
~#Z7QXH[c!Q-幱lďz$Y' m&:7mk. Ă/ p11p }BT SDֱF2#y|H5E` }6%Bpyπ! mLM kׄau6r^o܃cN E I ĿT |kH M q FkX4,Z9lxZ l b/"v6t,o +^w'D)
y#X\@/Y'Po8j x_cܟg_r4+yF3M1Sq HId.Qك!هV{fxG~?Ճ! .<B^ Vw~aɀ9@4/< WV5U jt\ PB6Ԇ f_2 ? 3rf>LM6 NTZrocaQ,gce Ѳm Wq_+pnGW5ۛV PV2?CPMik0TZْ bi 4AqMb*؎SD B{d}¯\X/dcF9 HCUVcRP+x{Y*.%YH`1"EC0-
"_5vi=ykQKv,U/h58JgDe1AO> +eĩ
g Y'SX- ߝ
; ) LEx͠
YΣ )F w*! ~
%q2ɔd~
ڒ;RP){?@5*$zD6Nd쾛|K 8y}%ߓB]cHA$Í: nA{(.~ĖGB1
> wo`C]Ǵ$N o>.= M$M",ͭ
u$).zjd-`."?g=虌FzᾀLG\jB3
B8 ? hf ^NC} E|.p)p p5[U@wqQգ1|!==.dU{j!Sl%> w; !*jI / M
/@M.i0m"tǃ 5$@^&wq(;ɧ ?&zb ZOWVΣ>jwȹM` ~
u/#6ST>%CDP<%+i k`J6RQ>3Y2*aq;=˘kL甀[tNK5c_76"exy}1pPd"eD.tR$ 6H@z0D1<㼟f_C´$N6QF aEy`H& O:0
Zה.ƸQ~$oc?& U$8I
BOy`p ,K iw c_C]a;>z u _Q$F$Nl:M bb :vm"H-`TE#FlY ^D ~א(JFofl)Wp WM:CC C2;rVmϏӓ۫t` Bc 2]h^ Cp楈Ooe(b_ pQ&b_CߨW3[JـL'8%h^ptf whyOf 8Cjmh d4 a+˰d0 O yx/B":h@
}\G_M w ! ߘאy(VaS#rTT`Pl
{] 1d $KAs+- :"س6R12(
ߌu`l%v$ ;3e5"{ţ6Bnw^g!
o"ckcrQQa]/]Ω1" 8QHb0^W fF_>s>GFz1r7:Hadqy*lU^8
_11rcSTي|c
5. `0 :`Ѓ5Q[['zHӋH, `;m"r@ cuu>!偈$7$gc"{/݁H)';-jd Σ; #l@ۅQ֭| -9doc?&5 !EږĆ~1D.$`0 $6?[Z ^PpgwC=#gOL` K[&2 5 !=hͫ^.N-ZҗӃC['0`0 )iI<"Zҋ/HQXGg&`0 5#k]qk`0 CFf#6R9Tm IENDB` nxtomomill-2.1.0dev3-475dd3907f78ea831727cd242104c9c2d16182f8/doc/tutorials/img/data_flow.svg 0000664 0000000 0000000 00000031624 15174674030 0027713 0 ustar 00root root 0000000 0000000
nxtomomill-2.1.0dev3-475dd3907f78ea831727cd242104c9c2d16182f8/doc/tutorials/img/silx_broken_link.png0000664 0000000 0000000 00000321336 15174674030 0031276 0 ustar 00root root 0000000 0000000 PNG
IHDR i n -tEXtCreation Time Tue 11 Mar 2025 01:32:09 PM CETay IDATxy|LW,IdQNc)ZKZjRU؊*-ŃiZڪ*jm쉄י#O/%~̜sUf=jrC1BZYSq\AX}o2FU, IjxAen߾͇ ~ڵkӧ} PJv@JJ
o6m7ւ]A8p /߿I&qB믿h۶mB!O ZliY*UoW^n:KkE^~ԨQTR'>R 9ywx"[lիtڕ;wҢE F#5W_eƌlݺٳgs%ٹs'&L`+WnݺѵkWfΜ ={t|jժ\oՋW_}h(Ժ6-Zлwo 9B5 6 ʕ+r'OڵkܻwUVkݙ=- ,nիWgƍ4n%y !B!JWƘ
)q04 yVɥeye5LFʕ+_HYSq(,]۷c֭[ǽ{J-!BdS$ >|uƨQHNNFQ.]D۶mqqqbŊ$%%(
]ٙ/+͛ٙӧqvvAj~\\ Gˋ*U0{lPFeRR%
4ٙ!C>}6mBÆ
9pWJiڴ)GQ߿?+VՕC(}֭jL ;v$88EQK/Dlll뗞֭[>}:˗_W^lܸEQ~:f͢lٲ 6 ggg;Eaƍ 2:uƤIeE_SNxd899Qvm :dRFcaa L:w犯}'F# ]vzZj x{{ʭ[raÆQb #k݅=ڟiii鉋 ]t!$$D]^z8;;s_x،xzzRZ5.].[o1c ^{5ʕ+Gǎ {.Fё
r|^u[.]0l05jǏ ϭ[իիWgn мysׯϊ+={65jɉ-Z(ѹsg\\\xٶmztsyԭ[:~:nnnceԨQ?j pBTɓiժ ,[#a7l%5ԩSQB5Ν;sYر#5k7Ɯ#kݱ:ڟN:zjZ-&MbܸqÇk.4iBLL n*ǦhO>ԯ_/E]\2;wFQ2:wI*UE̝;?y1sLvg]F~~?? dHZСCDEEѼysԩC͙7o 'Ã3gΠIOOW^tԉ ;vp)uFʕiР6˺2/ \+V筷?dȑՋ-[{B!B'Aޝ) ( G+ҚϹ`Rf-F~]wT"kKMٱc>>>t ?#n 9333E!00@K29ve/k5k1b:Q裏
BɥK[.?| .. kkk-qqqF)[.kcc@ll,2Uu@?~<[o1ydطo ݻwԫW. ]v&1_{u?evcN3k݅=ڟ+WO>j;SLQFjzsQZ5QF'0=6/\3gػw/z 777Fݻر#G:u ֭۷oȘG j}~u5nܘƍc4iӦ
7nPsNJ 0zhF#ݛ۷/~zmۆ"grMN^qՋ-[חc1b:֭[ׁoɏ?H֭1lܸQ:hB!O<;iCkh4 hIMZ<`L
kkk
FHHVEөSRRFPP;.]"==uaaa ˗h42}tƌgB!O:=<<GQ2=9s&'N 55T*Uvl-[KKKuY+++ǫ島۷IHH 665bŊܾ}ۤ|)b_DDpMo6lMHHW;;;pss"6OQnܸA@@ 7o6Y6""&&&ҷo_f͚v.e9566 bbbAQ3!&&Ftʙy洎uez=ckkK۶mղ ;v={Pn\>0Ǝ KӦMS͚53Ɯ#k݅=ڟ+Vd
ݻ8Z- $''caa-[Xd 3gΤ~,Xo)y
iҤljj*jRdL2&g_RrʩjZ=Μo2ec43sΑHttz*<< WWWz5c91)SPזңG><!B!xIkԁ;Z֡&F6shA1f,Tփ[,ZȘn*u֩wɗTťRJ,Yh"-[_c4 |6oСCK$!Btu:lXX:9sرcXZZc>Gj'0^u([,7o xʌf9LhтM6Z&3ܾ},,,L&>www9rd3gd̙\v =zCnr,၍
jY3֚5k LRRz?v֬Y@^u5dbff`(P{qM4hkEQ ɳu%_sA~ Fj'_ƍٵk))),_#GP)iccÉ'jEZ+29md"##s=$$,--qppL1ݷ[c*mɓ0` K,[n/_B!BҒ:ECi1+fGc?Fu jr9S[bEh߾=۷gڴi ?^}UmdOEmCӱl2u:3fСC "##YlkfÆ
2DNL!B˗s= >ڵk |@jj*'N`ΝٳU~zڴiԮ]˗ӹsgƍH !B!Dis$mVJ PT@wi#hfLo5G)[ŭ)5Xɉ ̙3}̣ޙ\mXZZf٣>G 2C/}-Џ)B!ٓ}NEQ]vܿN:{(
ӧOgԨQ|ҬY3 8딢@6m8|0'N͍M6ϱ?>SNaÆt:ut(4mڔ.]ЬY3\\\NƂ<4{ёݻw3sL&LN~|&ֿqFLBݺuQӴi|˚Zj
;v,!!!-[-ZХKBCC;v,wƆ{͂ xwY&̚5_~EQh4lذ1cs=ǖ-[m{w^JIMMG L0Amߟŋm}3 ˙1c:{O^~L8TYz57FQX|9WG)nڴ +++5j?LNLOp:5kyfT(:u={tY :P݅=ڟ~Yf8;;ҙ@]f
cǎEPZ5VXQ=cs֬Y4hЀ$6mZSfWͯܶ( ?ɓ'3qD̙ßf͚ԩSVˤIh90m4}ڵkGLL 5kdX[[i&&L@*Uprr?Ang߾} =zEQX`͚5c&B!B'&::l\C
ʥ${* 8p^x;Zz=B!ij# @ m(`0PzuN4c_ӧ?~<+W7,E`0вeKׯ_z郓S1FVz= nܸAjj*͛7uքѮ];f̘ӧ...\|_|3I;թSUr%c֬YtЁ۷osuΝ;tؑ~ӧiҤ qٳիWs֭kr~o 2G駟ǃח &p%VX. ̙3 >| ~o9q-bȑ}gOٯyŅYl˖-G-w^֭[i۶-V+#yxx#矹C_~QF1n8ۛÇ ѣׯ pq~Woضm(
)))ߟ8oN2e {ܒ$=$B!B!y(M2 'Oqƌ7h4[-;e5ja4VZ tڕ۷ӭ[7 zI =HOOŋ>} ^ ÇgΝo߾d^bj1 GF\\\>ϟ>>>c6lNlmmMzHOOh4ҳgOM8 գiӦӠAjԨ}ѣILm6ك
666L8Koc0hܸz-hݺ:ήGy}eʹkXn7x˓Ù3gaaaDGGk_ٷVO>#44-[駟`nݺ ~LJ/qۗ%Kp|||}Xhz``
ݻ8Z- $''Ӊ:99)Sggg%(J4iDm?55ZjiTLn#eñ K| IDAT?>͛7ё{???¨TRGs-q4yeCͯX(+WNj mA7eoR={ݻypssS8::ͱ#<<+m? 3QFZ]]]z sssؾ};V"""Nǝ;ww^mٲe$Z>Yeʔ1>;w$ ?F#B!B!W˱6(L8
Rre[rA#ԨQC USY;666jJ~O:~vhڴ)y |g(Çٳ'-[͍gz~d [hhI~HH\es XZZRlYnܸZW֎ܖ-sNNNٳ[ү_?,66h133^ 8q{|{o>ԩ@Æ
MOCWAeYg߿oҤ
]t ݽ$WE!B!B!h
0p@VXQ95kRZ5fΜӱիѨQ"+ē sлwrIfϞM xP%cϞ=K8::討Le
lٲ =z)PLAAAlڴ>}7puڶm d
u =zvZM>BCCپ}I7|À]6ͣI&,ׯ cÆ
xyyW_}U%UV2]dR&NA)HKK#99Y}TСCIKKK.WBX[[?B!B!D!$$$u$mƏ |M 4oޜ+RvmuDm~-{AIm?7qƩ{ܑ۬9}(
#G$55Uurr*uYg4 wB!B!h !
Gre w(yڰa?_Du ,^6mڨ
>3jԨV}<-2!9
^п---K*,!B!BQL9VQ0=IYTE ?#)))j
{ Ǽ샒]˄B!B!i%BciQv=}}} dʕh4<JX OB<=z? ?+qGK/^_ja !By 4,DqӥŢMkQkƳH9s&ߧ}+Y+W|2zz>FoR+ۖ`P``]Y ___t:])E&B!ӣT;i_y<$%%ǟТY{)0sf˷~[dUZ떟CRjUNX(Ic
!BKNNL~O-K؆Piކ6W-v 8 177瞣bŊxyyakkK\\ ܻw'Or} vE J$B-4?
X4/4[XBA=عs'#G̳ܪUhҤ EA!BgYYMLLDӡjh4h4Z-F/f 0-[ `>|8{Ύ3fo/_fTZ>-Zg$''ӷo_/_ +V`ڵ?f͚"٭[7٣&>>LJ qtt`Ν,X3gp95kɓ'V gΜe˖>}ʕ+kZjHb$2fZl_?HS=ʗ/ON,m۶RF!BOʅ:1Oɤ(
ZDz=͛5C[U4TX&M֭[cMơC 0tޝ_|H~mv>{i۶m\p =
۷oĺj*HJJ"**XܜEW^=}] (3x`̙c|n !9~zcׅz-sgύpR r?'Ow ҥK7o %VqlG_A}1H_ 7s,f(^N4$HK !!甒iv$5/v <ŋ|PPkœ՞?X3?K믿J-xs[ /\口'89s.WN: ߟiӦq-ݻgtѣ̙3q)B!ORU̜$vɚBrرUy!UF6l))) \t-Z3#FPG]v
{{{VZ3lڴÇSfMeuqqÃӧ 8/fС&e5MF ?~ڵkcggǀHKKSN:Eqppnݺ/j/aÆԪU pz3ʕcEoԮ]{{{ڶmKpp0 ݛ
*P\95jD\\\f0믙3gۗpI7o 5
ggguJ >zP14M8bcc
~͎WE 镐Pbt#$Dr-. 7,ֺ `0 cJMMPƑUP4p/7hxט;w.&LvUB ŋ߿?VVV@/bboM6"*㲸RFSR8{ W\ɓ =|ijiǩ;4I$ÅM%%#òeXlxzz0 ,,,$>> ڴiÕ+WJdqZ*R$I$I$I' eWꝴym[|}}更nݚչuVO^J``:JNQΝKdd$gΜԩS|rqqq\zP֮]ѣYt) ̙3|W4[sh4ҭ[7^xܹW_}ň#kG^׆o BBB Q;}BHOOWo "ohиW#M_F;|v)/M.D?%~;w%ޣlG V Hcr3֝R,1c6 Y36i ~+.$̓Og f/NBc휑1> L/{2S=yXtۊE hxb\MZМ^kYBz2owAHH<0yvҖ 5kְ~fϞ͇ ~ӧSUV3gΰzjL
\r %[i+ʹmlmXXЯ__ ѣJYZN `5^KItH45}Ѥ'j>$22N:Z햤GN !BȷoeРA9!Ӵ_鰱)T'Nёr1sL#f͚n333\]]7nLEQ?>eʔK.zF *Ue˖9sF-_F
Noood.]p!xxx0c G1eptt{:1ܶmhذ!{FѬY3ڴiÏ?.;`aaFaٲebnnN رciР:w}[n\t FCÆ
qٙjkk~fgg7/J+j'̌Cv1o_~ :бcGcC<]fϞƍ 1VZSf Gd=Ξ=ˍ7:"|ӦM@]B.quGՠC\`[q 0_㝟%W_%** ;ҩS'Kf{6dQ\jj(gW'mKpp0xzz2x`<333M 2d&eԩCݹ{:{RI&"" ˣ(ʹ3>>FZZ ,dԈQ 2l!ξ!> +iLRX`HCI+NZooo
p-:uDxxx] :&B!xJln ֭W`T4>B-F)pk///u4;w8q"ǎ #55JښҴ}dm+!!ԼJ*q֭CnꗪPN8A54hwuuU_ywwwʔ)HrQ| !CG $$$0h ,Xa2;ccc)W.Nʖ-ƚ,111&Vmmff9ӡC5F 9r]vO/// ܹsԩC'O_̙3lڴ~g=n߾fffg*U.kB]攏_bT00"UJ!UQPh4@Jjgnǣ$}˗/st:4:kIyx)j7iB= U }
O C
_;ft0 |
EEc ZmXŹXĆg
m?f܃ 5֕QhD Cbui]@Mp,C 蜂Ǟ揩;o
}0/mƹ EAas @D4i҄_~{ |E077Wo}T Ҍi"1Jzʅ877oݻ>yw5իWs#Lhhw钲lVvq&&M1'o=EgYݻw^cԩSTȑ#֭ˋ1c`ooOdd$s bKu Ϳ~Ν;9lSE:Z HӦ t[oӰa-,H{ i$%'VV8PJ٪T|NeѣG+~?>}]mƷ~ՙQ
RRR8x ͛7J*DEE?+B!J_{2;f 2FIk [;>#Ktt4 .TCjհ"))իW9nȸstƍFv˗>}0{l 篿b˖- 4Fs1w\ꫯk 0//%Ke!d dY5aaaL8@ϮIJJbӦMܾ}(֭[w}GΝ]V<6l }YRRC壏>ٙW_}N:1nܸ\W ̟?T ;Ɩ-[۷/B
V++_ĉHcQ wbN:el`rz
fP ʙ])ؗ/E NڵkN3 t֍$Ofܸq? {{{ تh"ƍ7Q| ;ggg/M|ȑ ?~oSO1}tSgΜ9+W/h"HIIa5?^֬YC
swh0mϘ1L/^LXX6m0
J7憻;˖-s@
666L6ۣj h۶mB{7S4VVaQ6** N jEZ zs皖3fL>ۇB0u ƍ9s&Ǐ^G[[N
[EA(h;ؼONDWUJT.Ʀ DZ^ѷ2E%;͟N_>ҫy
vxϒG= uP2C HW
L]iOy~'K&NC=DFFڗ`2Y* n$Mll,=z0 i4+Yjk?J3AU}o_)Sh?vqr!O5WB}a 38z(:N^GӡiyktW^Vk \uP~96> _N*884ggg&MTthZZ-:-[RPP@NN .\@^*]i@!^|qׯA;ڶmQQQpR
U(((O(ZYYsN"##4.!B!-[nC{kf+ʦMԩS#T/<fN
F r` ޱVm >\GPJž}*R-ZĒ%KLp<裷$i:udڧ 'L/lZ* @,l)CJ
`>];WP}V z ,<˯O
|$?7 `o(^͗bS7zy]S3t@:ޤ+++
# uBzɉ'P*x{{k.o?jv,hӧUzi~R~jWT={777ڷoϡC,7~ 6զ }xt {vm t͗>}ԩ: _} 8z?P:趢Q+b[l&ZZBRR6MwG2{zVt666Z:ESRRBBBfg U]ٺqFWFFIBT-2%jo$h]j$_caa`Ņ-[P(PTk(ըT* %I+B\I_i-,
IB!BU?Ltԃξ ?"%vv\JEYYkqq1NBQXX
/^ՕN:U:Kݝ !BrS`4P(0ޘ>JѵkwJܹ F(Bq'tɉujyx0g(V>f((ՂcdQEFuUϏ׳e˖MYRذaC
TARN VXTM
~@ҋ^Aef ?އٔY(Q?KLq!ks gҞmFT(gkݳE)l( }#)=n̎<( PU 7{b
,X{o[eu2z$mYֹX]<ՠ1.mf~?HBB>>>|Ubteee|ac۩/澷= n:x QOD
-¯8 f^t֕c+Wϋ|T7T^ v/# Jez?]tRJKKyg9s ;v B!s5Hږ-j\!~xxxpA(Bq'yQmFU@ZܲΖ //(zm{h
M\5Mj4z_ױ/:_%:v+N|ջ'O=0gs죕xf&LEJ_ Ei>
`^p}..8iloֺuk<<6t(!!\{<e-F5FGwQQQ\\ 6unΪ[VR֬
eNa-4gtttIڂ>۶a{͛hcT{{lH_NL8x|N-imb)-ӡVkhXڄ'@7o/Hhhhyoa.1ApY]h$11FC@@ jM6[B!wFK}OP(oB!7uǚP(<< AX`JcTP(>feeet:z=
"JeGpV}\G__ ǎm~0*(k[[!a̞u _8e:Egc#,k0 j^ * 2j)۰ ݑs(}c
M 'O~E~4PHRO_]P~$ϛ^ͺu |O?T>un +Zzsر;~ 3f ӦMBY7|3|ش6F[nfu{oGD\߾G{[OVi9Gڴ g)h:eة3QG k֤^`˖-\|:Ǔƹs*U}w GPZaVZ1b
0:!BQSB! oLh4+6Au =-HaMq1ΟG3kkqmzKW[ s`+ Q&Gt>Gf1^f ZjWn[0}x|?{l6l;C͙8Pk{Oꓴڼ]~~~ 0(OFDD㏕pVp) hZ˴c g2JMWr~chv֬c yݱB!iJ7[[y%} lᡏciYy.ׯ [l`Ȑ!
zI(PQT1ť
/d;ˈɿę \&X|ac&
Ta'h:b3q} y=wYs f ]žXdmc%Hv/}^uaeeElli;-nnn5^Jk6ܯ .da4Y`AK ikk˂ ,plJFcFK6lEi>
x) o
1 :p
|g}VܧZf@7>o[kÔTB!HV!B{};ZP(xx`~["2 .$== Fo`@=\GU"(*fNU(<`N ӸXRSZ%hPQk)영$VZO后X*Fx ߣ;
{gN+WKF
ns0 "{+A[1uݻ|=5iʬQ棾z/`=jٲ%7ƍ !77TZlYoq45J
F[/ ll×۷ϗMp;㩧2lFts@CIHHh>sQڶm˂ *L\ =zСC~zK6B!
AB4t2339y$F@ݻwSV|MRRRP(s;11@LիYz57onHB{Í) 14dʧMNNOO^FS &]9 {Vm;^ W'_)-. PtNY*F;QeQi]HZ;TQeS4>|8L:OP```
ӌ 3SNt} 嫕o+ }¿**R5Xe&fcǎO3c >L\\ +Vlzz:guuI1w\ a aΜ9̘1fw̷iӆuoӳgOYr%֭#W^eٜ>}77Ǥ]v8q'O
?> "##={~8tھ[]B 3WVVV;E]ƛ8q"jkhmc1Q\9Q>Zՠ-OYC[UL/VbzM Q®|6( W<_vk>ss WZӓ4zU/ﵢK)z]RGCv ^l:^|%Wn.-̍zhΤ}ɔy_/ѡ>P}%[Pۚ} 2 ,,,n+ CL} !BQSwevkq#
vߴ_GH\ Q///fϞ~8lmm?~<,]Nc $$$Ю]
n$